Basic Information
VIS ID
TVIS30008793
Fusion event
HIV-AGGF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
76350959/77055134 (Hg38)
End
76350959/77055134 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGGF1
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-21-5p ; hsa-mir-877-3p ; hsa-mir-30a-3p ; hsa-mir-4307 ; hsa-mir-1305 ; hsa-mir-6765-5p ; hsa-mir-1304-5p ; hsa-mir-526b-5p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-27b-5p ; hsa-mir-95-5p
Nearest miRNA
hsa-mir-10397/Upstream/4176471; hsa-mir-103a-1/Downstream/5785021;
Nearest TSS
ENST00000502646/Upstream/24232; ENST00000512650/Downstream/18747;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/24088, chr5-CpG: 112/Downstream/21923
Upstream sequence
TCTTTTTTGACATAAATTTTCCCCCTAAATGCCAAGTTTGCATGTTCATTGTTTATTTTTTGTTTTCTGATACTAATTTGAAAATGAATATGTTGCATTA
Downstream sequence
CACAATAACATGAATTTTGGTTTCTCTGGCTTTTATTTTGCATATGGCTATGTTCCTTTGCAAAATTTACTTAATATTTCTGCATTTGAGATTCTATTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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