VISDB Viral Integration Site DataBase

VIS ID

TVIS30008821

Fusion event

HIV-LNPEP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q15

Reference genome

Start

End

96341757/97006053 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-877-5p ; hsa-mir-744-5p ; hsa-mir-18a-3p ; hsa-mir-361-5p ; hsa-mir-30e-3p ; hsa-mir-4689 ; hsa-mir-6858-5p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-4524a-3p ; hsa-mir-4302 ; hsa-mir-548aw ; hsa-mir-5007-3p ; hsa-mir-4697-3p ; hsa-mir-6131 ; hsa-mir-133a-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-4704-3p ; hsa-mir-548aj-5p ; hsa-mir-512-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-148a-3p ; hsa-mir-138-5p ; hsa-mir-6783-5p ; hsa-mir-6888-5p ; hsa-mir-4797-5p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-218-5p ; hsa-mir-636 ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-5692a ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6844 ; hsa-mir-6868-3p ; hsa-mir-6749-3p ; hsa-mir-5705 ; hsa-mir-3124-3p ; hsa-mir-4469 ; hsa-mir-1237-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-5196-3p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-1197 ; hsa-mir-8080 ; hsa-mir-3150b-3p ; hsa-mir-4784 ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4644 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6758-5p ; hsa-mir-6760-5p ; hsa-mir-6856-5p ; hsa-mir-6873-5p ; hsa-mir-539-5p ; hsa-mir-5680 ; hsa-mir-6731-5p ; hsa-mir-8085

Nearest miRNA

hsa-mir-10397/Upstream/926841; hsa-mir-103a-1/Downstream/3810429;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/69632, chr5-CpG: 18/Downstream/177662

Upstream sequence

AGTCTTTATAGATGGTAGGAAAAGAGGGAAGGGTACAGataaattaaaatgtaaaattttttaaaccaatttttatttttaaggaaaaagttttatatat

Downstream sequence

atatatatatattttGTAGGTCACAAACCAAACACTAGATGTAAAGAGAATGATGAAAACCTGGACCCTGCAGAAAGGATTTCCTTTAGTGACTGTTCAA