Basic Information
VIS ID
TVIS30008834
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
107091229/107755528 (Hg38)
End
107091229/107755528 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/6938963; hsa-mir-103a-1/Downstream/2758301;
Nearest TSS
ENST00000502646/Upstream/38687; ENST00000513676/Downstream/609239;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/83038, chr5-CpG: 220/Downstream/625080
Nearby gene
EFNA5(No orient, 84633)
Nearest cancer related gene
EFNA5(TSG, No orient, 84633)
Upstream sequence
ctaaaatgaaaaagactcggcagcacccaaaattggcaagaatatggagtgattagaaatctccaacactattggtagaggtaaaaaaaatggtacaacc
Downstream sequence
tggaggatgtgcaagctattttatgacccgaaaacgctacttctaggtatttacccaaaagaaattgcaatatgtgttcacaaaaccttgtacaatcatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate