Basic Information
VIS ID
TVIS30008840
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
109346722/110011021 (Hg38)
End
109346722/110011021 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/9194456; hsa-mir-103a-1/Downstream/502808;
Nearest TSS
ENST00000502646/Upstream/127839; ENST00000508781/Downstream/419080;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/125523, chr5-CpG: 60/Downstream/727883
Nearby gene
LINC01848(No orient, 125522)
Upstream sequence
attatgaattttctactctgtttcattggtttctaattgtctattcagatgacaaaacaatgctcctttaactactgaaactttattatgtcttaatatc
Downstream sequence
tggtgctataaaacctcttattttgttatcttcttcaagatagtttttcttattcttggcccttgccatttccacagaaaagctggaattttatttggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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