Basic Information
VIS ID
TVIS30008843
Fusion event
HIV-SLC25A46 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
110084967/110749266 (Hg38)
End
110084967/110749266 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC25A46
miRNAs that regulate target gene
hsa-mir-96-5p ; hsa-mir-744-5p ; hsa-mir-2113 ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-1257 ; hsa-mir-1251-3p ; hsa-mir-4328 ; hsa-mir-4705 ; hsa-mir-95-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-568 ; hsa-mir-449c-3p ; hsa-mir-621 ; hsa-mir-539-5p ; hsa-mir-4712-3p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-618 ; hsa-mir-4659b-3p ; hsa-mir-6875-3p ; hsa-mir-4659a-3p ; hsa-mir-2355-5p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-10397/Upstream/235351; hsa-mir-103a-1/Downstream/5506477;
Nearest TSS
ENST00000502646/Upstream/3697; ENST00000509432/Downstream/4036;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/9744, chr5-CpG: 29/Downstream/323740
Upstream sequence
agattggaaaatgttaaccaagatggagaattcaagaagaagaaaaagttggagtagggaagaagataaagaatttatctttcaataaatgaagtttgag
Downstream sequence
attcttgcaagacattgagggagagggacatgtctcatatttggttggaaccatggatcagagtaaaaaaaaaaaaatagaaaattgaagcacagggaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate