Basic Information
VIS ID
TVIS30008844
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
110538961/111203263 (Hg38)
End
110538961/111203263 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/689348; hsa-mir-103a-1/Downstream/5052480;
Nearest TSS
ENST00000502646/Upstream/106256; ENST00000504090/Downstream/20390;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/110691, chr5-CpG: 89/Downstream/20608
Nearby gene
CAMK4(No orient, 20986)
Upstream sequence
CTCTTGTTTACACTTGATAATTTGGAAATTTAACTTTATTGAACTTTATCCATTACACTGGGGGTTACCATCTCATTTCAAGTACAAATTCTCACTTGTG
Downstream sequence
ATATAAAAGCAACTTATTAACTGTTCCAgttgtggacactgctagttacctaactgattctcctttttttctctattaatcagaatgcagatatttcagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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