VISDB Viral Integration Site DataBase

VIS ID

TVIS30008848

Fusion event

HIV-DCP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q22.2

Reference genome

Start

End

112356841/113021144 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-128-3p ; hsa-mir-24-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-1286 ; hsa-mir-4282 ; hsa-mir-3613-3p ; hsa-mir-23c ; hsa-mir-4722-5p ; hsa-mir-218-5p ; hsa-mir-873-5p ; hsa-mir-4727-5p ; hsa-mir-452-3p ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-95-5p ; hsa-mir-944 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-371a-5p ; hsa-mir-888-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4679 ; hsa-mir-6730-3p ; hsa-mir-330-3p ; hsa-mir-4501 ; hsa-mir-888-3p ; hsa-mir-664b-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-153-5p ; hsa-mir-4668-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-512-5p

Nearest miRNA

hsa-mir-10397/Upstream/2507229; hsa-mir-103a-1/Downstream/3234599;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/43835, chr5-CpG: 37/Downstream/273378

Upstream sequence

AAAATGGCAAGTATGAGATGAACATGATAAAAGTATGTTTATATAACAGGAAGAAgctgggcgcggtgctcatacctgtaatcccagcactttgggaggc

Downstream sequence

tgagttgggtggatcacgaggtcaggagttcgagaccagcctgaccaacatggtgaaactaaaaattcaaaaattagctgggcgtggtggtgcgtgtctg