Basic Information
VIS ID
TVIS30008849
Fusion event
HIV-LOC105379130 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
114743372/115407675 (Hg38)
End
114743372/115407675 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105379130
Nearest miRNA
hsa-mir-10397/Upstream/4893760; hsa-mir-103a-1/Downstream/848068;
Nearest TSS
ENST00000502646/Upstream/110844; ENST00000506485/Downstream/137219;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/111025, chr5-CpG: 65/Downstream/136741
Nearby gene
CCDC112(No orient, 110914)
Upstream sequence
CAGGGGCTGAGAACCACCTGGAAGCCTCACCAGCTGGAACTTTCATCACAAAAGTCCAGATCTGCCCTCATAATCACATTTCTCCTCCTACACATGAGTA
Downstream sequence
TTTAAGCAATAGATTGTTTATCATTATTTTATCAATAGTCATCGTCATGGATAGTTAACATTTTTCATTCTGTCTGTGTTACTTATCAAATGTCACACTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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