VISDB Viral Integration Site DataBase

VIS ID

TVIS30008850

Fusion event

HIV-FEM1C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q22.3

Reference genome

Start

End

114870636/115534939 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-93-5p ; hsa-mir-18a-5p ; hsa-mir-16-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-95-5p ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-8054 ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-302e ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-4635 ; hsa-mir-3646 ; hsa-mir-548l ; hsa-mir-3662 ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-526b-5p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-3121-3p ; hsa-mir-3117-3p ; hsa-mir-411-5p ; hsa-mir-1258 ; hsa-mir-20b-3p ; hsa-mir-1197 ; hsa-mir-5680 ; hsa-mir-1183 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-548g-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-5187-3p ; hsa-mir-3140-5p ; hsa-mir-338-5p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-1278 ; hsa-mir-5003-3p ; hsa-mir-183-3p ; hsa-mir-4680-3p ; hsa-mir-584-5p ; hsa-mir-6811-3p ; hsa-mir-1253 ; hsa-mir-1914-5p ; hsa-mir-5579-5p ; hsa-mir-3976 ; hsa-mir-577 ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-7109-3p ; hsa-mir-153-3p

Nearest miRNA

hsa-mir-10397/Upstream/5021024; hsa-mir-103a-1/Downstream/720804;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/238289, chr5-CpG: 65/Downstream/9477

Upstream sequence

tccaagtgatacctacgctgctggtccttgagtagcaagAAAatagagaaggattcttattttcttgtttgctatatagatacttgccacatagctaata

Downstream sequence

tatctaatagcaatatcaagtcatatgaacataaatttaaaaggagggctaggtcacagccctgttttacaccatatagaaatAAAATTGTATCATTCCT