Basic Information
VIS ID
TVIS30008852
Fusion event
HIV-LOC101927100 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
114955206/115619509 (Hg38)
End
114955206/115619509 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927100
Nearest miRNA
hsa-mir-10397/Upstream/5105594; hsa-mir-103a-1/Downstream/636234;
Nearest TSS
ENST00000502646/Upstream/2945; ENST00000512900/Downstream/6505;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/17057, chr5-CpG: 71/Downstream/6123
Upstream sequence
AAAATACCAGTTTAAGATGTTAACGAATAAGTGGTAAATAATTCTTTTTCATGCCTAATTGAGTAACTTTTAGATACGATCTAAGCCCATAcaggttgag
Downstream sequence
tatcccttatccaaaatgtttgggaccagaagtgctttgaatttcagattttttctgattttggaatgtctacatatacataatgagatatctttgtgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate