Basic Information
VIS ID
TVIS30008853
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
115086352/115750655 (Hg38)
End
115086352/115750655 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/5236740; hsa-mir-103a-1/Downstream/505088;
Nearest TSS
ENST00000502646/Upstream/58488; ENST00000512900/Downstream/4989;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/124383, chr5-CpG: 122/Downstream/64996
Nearby gene
CDO1(No orient, 54078)
Nearest cancer related gene
CDO1(TSG, No orient, 54078)
Upstream sequence
agatggctgattgtccatcatttgcacttttctcttaaggactaaaagctaaaagggaaaggtgttttggactgagtgtactgcttaagggactagctcc
Downstream sequence
ccaaggtgtcacccttgggttggttcttcccttttatgtgtctcaatgaaaaacaggaattcagtgtgcttaaggcactgggagatcagtcccttatatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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