Basic Information
VIS ID
TVIS30008854
Fusion event
HIV-AP3S1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
115239967/115904270 (Hg38)
End
115239967/115904270 (Hg38)
Orient
-
Location type
Intronic
Target gene
AP3S1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-877-5p ; hsa-mir-30c-2-3p ; hsa-mir-18a-3p
Nearest miRNA
hsa-mir-10397/Upstream/5390355; hsa-mir-103a-1/Downstream/351473;
Nearest TSS
ENST00000502646/Upstream/9183; ENST00000503203/Downstream/58184;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/61711, chr5-CpG: 33/Downstream/57640
Upstream sequence
CAGATTGGAAAAAACAGACTTTATTTTTATAATTATTAGTGTTAAGCTCAGATGTTTCGTTGATTTAAAGTAAATATTACTTTGAAAGCATCAAGGTTTT
Downstream sequence
AAAAATACACTGGCATTAATTTACAACAGGTGAGTTCTGAAAAATTTTACCTTGTTGGCATTTTAAAGGATCAGTTTAACTCAATTCAATTCTGTGTCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate