Basic Information
VIS ID
TVIS30008859
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
121612286/122276591 (Hg38)
End
121612286/122276591 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/3121875; hsa-mir-103a-1/Downstream/6821097;
Nearest TSS
ENST00000502646/Upstream/116400; ENST00000509652/Downstream/34763;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/198197, chr5-CpG: 92/Downstream/35164
Nearby gene
SNCAIP(No orient, 35478)
Upstream sequence
aacatgtaagtctttaatccatcttgaactaatttttgtataaggtataaggaagggatccagtttcagctttctacatatggctagccagttttcccag
Downstream sequence
caccatttattaaacagggaatcttttccccatttcttgtttttgtcaggtttgtcatagatcagatagttgtagatgtgtggcattatttctgagggct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate