Basic Information
VIS ID
TVIS30008867
Fusion event
HIV-LINC01184 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
127327227/127991535 (Hg38)
End
127327227/127991535 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01184
Nearest miRNA
hsa-mir-10397/Upstream/8836819; hsa-mir-103a-1/Downstream/1106153;
Nearest TSS
ENST00000502646/Upstream/56292; ENST00000504416/Downstream/12453;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/473302, chr5-CpG: 200/Downstream/91367
Nearby gene
LINC01184(No orient, 30017)
Upstream sequence
ctgcctcaatttcagaacttattattggtctattcagggatttgacttctatgcaaataaactagaaaatctagaagaaatggataaattcctgacaaaa
Downstream sequence
tttcaatcttactattacttaaTACAAGTAACACCAGCAGCTTCAGAGAGAAAAAACAGATGTAGAAGTTGAAATTTTTTTTATTCAAAACAGCAGATGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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