Basic Information
VIS ID
TVIS30008869
Fusion event
HIV-CHSY3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
129414497/130078804 (Hg38)
End
129414497/130078804 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHSY3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-484
Nearest miRNA
hsa-mir-10397/Upstream/681657; hsa-mir-103a-1/Downstream/2139045;
Nearest TSS
ENST00000502646/Upstream/170717; ENST00000507584/Downstream/1083823;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/172885, chr5-CpG: 27/Downstream/916274
Upstream sequence
AAGTGCCAAAATAAATTCCTATTGACTTCATCAAAGCAGACCTTATTCTTTTGCTCAGTGCTTGAACCTTCAGTGATGCTCAGCTGGGCTCCGAAGGAGA
Downstream sequence
GGGAAGAAGACAGGCAGCTGTTGAGAAACAGCTGTGCCTATTGGAGAGGCTGTGAACAGCAGTGGAGAATAAGGCCGGATCCATTGCTACATGTCTATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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