Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene130903686130836402130837200130868347130869129130870044
Basic Information
VIS ID
TVIS30008870
Fusion event
HIV-LOC107986449 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
130205737/130870044 (Hg38)
End
130205737/130870044 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
LOC107986449
Nearest miRNA
hsa-mir-10397/Upstream/1472897; hsa-mir-103a-1/Downstream/1347805;
Nearest TSS
ENST00000502646/Upstream/961957; ENST00000507584/Downstream/292583;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/964125, chr5-CpG: 27/Downstream/125034
Nearby gene
HINT1(No orient, 289239)
Upstream sequence
GTGGCATTTTAAGTAACTTCAATAAGAACTGACTCTAggccgggcacagtggctcatgcctataatctcagcactttgggaggccaaggcaggtggatca
Downstream sequence
cctgaggtcaggagttcaagaccagcctggccaacctggtgaaactccatctctactaaaaatacaagaactagtcgggcgtggtggcatgcacctgtag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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