VISDB Viral Integration Site DataBase

VIS ID

TVIS30008874

Fusion event

HIV-AFF4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

132274408/132938716 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-421 ; hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-532-3p ; hsa-mir-18a-5p ; hsa-let-7b-5p ; hsa-mir-3156-5p ; hsa-mir-7161-3p ; hsa-mir-126-5p ; hsa-mir-466 ; hsa-mir-4789-3p ; hsa-mir-101-5p ; hsa-mir-548c-3p ; hsa-mir-519d-5p ; hsa-mir-4795-3p ; hsa-mir-5695 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-425-5p ; hsa-mir-4659a-5p ; hsa-mir-4659b-5p ; hsa-mir-205-5p ; hsa-mir-142-3p ; hsa-mir-4424 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-936 ; hsa-mir-4776-3p ; hsa-mir-5590-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-4643 ; hsa-mir-302f ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-587 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-627-3p ; hsa-mir-6832-3p ; hsa-mir-3938 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-27b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-10397/Upstream/573117; hsa-mir-103a-1/Downstream/488880;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/71655, chr5-CpG: 76/Downstream/24551

Upstream sequence

AAACCTCCTGATTTGCATACTAAGTGTCATGCAATAAAAGCAATTTAACGGCCTGAgcggctcacgcctgtaaacccagcactttgggaggccgaggtgg

Downstream sequence

gcagatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgcagtggcaggcg