Basic Information
VIS ID
TVIS30008882
Fusion event
HIV-TRPC7-AS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
135588973/136253285 (Hg38)
End
135588973/136253285 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
TRPC7-AS2
Nearest miRNA
hsa-mir-10397/Upstream/450210; hsa-mir-103a-1/Downstream/1394287;
Nearest TSS
ENST00000502646/Upstream/26848; ENST00000513958/Downstream/50472;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/59995, chr5-CpG: 56/Downstream/103424
Upstream sequence
ttgtctttataatatggcttttagaacatttaaaattatatagctcatggttgttgcttgccctgtatttctattgaataatgctATTCTATACCTTCAC
Downstream sequence
ATTTACTGATTACtaaattattactatttaaattattttaaattaCCggcataccttgttttattgcactttgctttattgtgcttcacagagactgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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