Basic Information
VIS ID
TVIS30008884
Fusion event
HIV-KDM3B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
137730655/138394966 (Hg38)
End
137730655/138394966 (Hg38)
Orient
-
Location type
Intronic
Target gene
KDM3B
miRNAs that regulate target gene
hsa-mir-101-3p ; hsa-mir-93-5p ; hsa-mir-935 ; hsa-mir-877-3p ; hsa-mir-186-5p ; hsa-mir-128-3p ; hsa-mir-92a-3p ; hsa-mir-23a-3p ; hsa-mir-3679-3p ; hsa-mir-8070 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6826-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-454-5p
Nearest miRNA
hsa-mir-10397/Upstream/747317; hsa-mir-103a-1/Downstream/2168705;
Nearest TSS
ENST00000502646/Upstream/8389; ENST00000504095/Downstream/2912;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/41601, chr5-CpG: 60/Downstream/43924
Nearest cancer related gene
KDM3B(TSG, No orient, 0)
Upstream sequence
gaaatgatggggcttggaccacggagatagtgatggacatgatgagaagtagttgaagatagagtagacataattttctgatgaattagatgtgaagtat
Downstream sequence
gaaagaaaggacttaaggatgattctatgtctggttctagatatgtcttttggcctaaaaacaggaagaatgagattgccatttactgataaagagattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate