Basic Information
VIS ID
TVIS30008885
Fusion event
HIV-ETF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
137850605/138514916 (Hg38)
End
137850605/138514916 (Hg38)
Orient
-
Location type
Intronic
Target gene
ETF1
miRNAs that regulate target gene
hsa-mir-423-3p ; hsa-mir-128-3p ; hsa-mir-125b-5p ; hsa-mir-205-5p ; hsa-mir-552-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-3686 ; hsa-mir-1298-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6753-3p ; hsa-mir-7107-3p ; hsa-mir-4736 ; hsa-mir-3607-3p ; hsa-mir-5088-3p ; hsa-mir-6513-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3159 ; hsa-mir-494-3p ; hsa-mir-302c-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-1306-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-653-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940
Nearest miRNA
hsa-mir-10397/Upstream/867267; hsa-mir-103a-1/Downstream/2048755;
Nearest TSS
ENST00000502646/Upstream/49426; ENST00000521941/Downstream/2725;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/22404, chr5-CpG: 96/Downstream/27659
Upstream sequence
AAATATTGAAACAGTCCTGGGACATACATAGATAAGAGTTCTCACAGTGGAATCGGAATACTACACACTTAGTTGATCTCTAATTGCCAGGGGACAATCT
Downstream sequence
CTTTGGAAGTAAGAAATTGTTACCCATTCCATTTTATTTTTATAAACTgatcctcctctttggcctcccaaagtgctgggattacataggtgtgagccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate