Basic Information
VIS ID
TVIS30008897
Fusion event
HIV-ANKHD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
139882413/140502828 (Hg38)
End
139882413/140502828 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKHD1
miRNAs that regulate target gene
hsa-mir-424-5p ; hsa-mir-320a ; hsa-mir-185-5p
Nearest miRNA
hsa-mir-10397/Upstream/2855179; hsa-mir-103a-1/Downstream/60843;
Nearest TSS
ENST00000502646/Upstream/6178; ENST00000506930/Downstream/1941;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/100305, chr5-CpG: 36/Downstream/44744
Upstream sequence
CTTTTAACTCATTGAATGACAACAATTTTTCATTATTACTATTATTTTTTTCTTGGCCACTTCTTCCAGGAAAAAAATGACAAAAAATTTTAAGGCTTTG
Downstream sequence
TTTCCATTTTGCATATTCTTATAGGTGAAACAAACATATGTAATAATTATTCCTATTTGTAACTAAATAGTTAAATTATGTTATTTATGTGATGACAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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