VISDB Viral Integration Site DataBase

VIS ID

TVIS30008901

Fusion event

HIV-DIAPH1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.3

Reference genome

Start

End

140995408/141615841 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-615-3p ; hsa-mir-328-3p ; hsa-mir-320a ; hsa-mir-185-5p ; hsa-mir-27b-3p ; hsa-mir-23b-3p ; hsa-mir-92a-3p ; hsa-mir-18a-5p ; hsa-let-7e-5p ; hsa-mir-7110-3p ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-342-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-1228-3p ; hsa-mir-6800-3p ; hsa-mir-3674 ; hsa-mir-502-5p ; hsa-mir-2467-5p ; hsa-mir-2116-3p ; hsa-mir-4459 ; hsa-mir-4695-5p ; hsa-mir-1306-5p ; hsa-mir-1178-5p ; hsa-mir-1233-5p ; hsa-mir-127-5p ; hsa-mir-1293 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-1972 ; hsa-mir-2278 ; hsa-mir-297 ; hsa-mir-3677-5p ; hsa-mir-3928-5p ; hsa-mir-3944-5p ; hsa-mir-424-5p ; hsa-mir-4483 ; hsa-mir-4501 ; hsa-mir-4524b-3p ; hsa-mir-4690-5p ; hsa-mir-4701-5p ; hsa-mir-497-5p ; hsa-mir-4999-5p ; hsa-mir-541-3p ; hsa-mir-567 ; hsa-mir-588 ; hsa-mir-654-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6778-5p ; hsa-mir-6806-3p ; hsa-mir-6823-5p ; hsa-mir-6838-5p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-10397/Upstream/967915; hsa-mir-103a-1/Downstream/2064019;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/102219, chr5-CpG: 92/Downstream/2669

Upstream sequence

caaaaaaagaaaaaaaaaaTTCTCGCTAATGCTCCTAGTTAAATCAGGAAGCAATATTCTCTCTTACAATGCATCACTTTCTCGATTATATGAGAGTGCA

Downstream sequence

TACAAAGTCTATTAAATGTAAGAATACTCTGCAGCCTCCTAACATCCCGGTTCTACTTATTCCCCTTACGTATATTTTGGAAATCAGTCTATTTGACACC