VISDB Viral Integration Site DataBase

VIS ID

TVIS30008906

Fusion event

HIV-NR3C1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.3

Reference genome

Start

End

142713232/143333667 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-124-3p ; hsa-mir-590-3p ; hsa-mir-130b-3p ; hsa-mir-155-5p ; hsa-mir-32-5p ; hsa-mir-22-3p ; hsa-mir-19b-3p ; hsa-mir-421 ; hsa-mir-1279 ; hsa-mir-4699-3p ; hsa-mir-5580-3p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-4672 ; hsa-mir-5590-5p ; hsa-mir-369-3p ; hsa-mir-126-5p ; hsa-mir-618 ; hsa-mir-1277-5p ; hsa-mir-4528 ; hsa-mir-183-5p ; hsa-mir-192-3p ; hsa-mir-377-3p ; hsa-mir-374a-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4423-3p ; hsa-mir-593-5p ; hsa-mir-125b-1-3p ; hsa-mir-6849-3p ; hsa-mir-5586-5p ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4282 ; hsa-mir-3162-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-4764-5p ; hsa-mir-511-3p ; hsa-mir-6757-5p ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-190a-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-1179 ; hsa-mir-6768-5p ; hsa-mir-144-3p ; hsa-mir-374b-5p ; hsa-mir-6868-3p ; hsa-mir-182-5p ; hsa-mir-4652-3p ; hsa-mir-544a ; hsa-mir-1263 ; hsa-mir-127-5p ; hsa-mir-4795-3p ; hsa-mir-496 ; hsa-mir-196a-3p ; hsa-mir-6131 ; hsa-mir-133a-5p ; hsa-mir-5186 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-3182 ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-4714-3p ; hsa-mir-6800-3p ; hsa-mir-137 ; hsa-mir-138-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1237-3p ; hsa-mir-17-5p ; hsa-mir-204-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-211-5p ; hsa-mir-3609 ; hsa-mir-3909 ; hsa-mir-4256 ; hsa-mir-4446-5p ; hsa-mir-4755-5p ; hsa-mir-4796-3p ; hsa-mir-5006-3p ; hsa-mir-5088-3p ; hsa-mir-5193 ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-548ah-5p ; hsa-mir-623 ; hsa-mir-660-3p ; hsa-mir-6852-3p ; hsa-mir-93-5p

Nearest miRNA

hsa-mir-10397/Upstream/2685741; hsa-mir-103a-1/Downstream/346193;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/562400, chr5-CpG: 303/Downstream/68839

Upstream sequence

gaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatgagctgggtgtggtggcacgtgcctgtagtcccagctactcgagaggc

Downstream sequence

taaggcaggaaaatcgcttgaacccaggaggcagagactgcagtgagccaagattgcgccagtgcactccagctgggcgacagagcgagactccatctca