Basic Information
VIS ID
TVIS30008908
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
142824091/143444526 (Hg38)
End
142824091/143444526 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2796600; hsa-mir-103a-1/Downstream/235334;
Nearest TSS
ENST00000502646/Upstream/9014; ENST00000514942/Downstream/86824;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/39020, chr5-CpG: 30/Downstream/725849
Nearby gene
NR3C1(No orient, 9014)
Upstream sequence
ttgccaatgatcaagaaaggagctgaatcagatcttttaaggccatcgccagtattgatattacaaaattttgtgatGATGGCAGAAATACAGAAGACAG
Downstream sequence
GGAAGAAatatatatatatgatagaaatatatataaatatatatattaaaaaatatataggatagaaatatacataaaaatatattaaaaatataaaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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