Basic Information
VIS ID
TVIS30008909
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
143179769/143800204 (Hg38)
End
143179769/143800204 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/120233; hsa-mir-103a-1/Downstream/5262109;
Nearest TSS
ENST00000502646/Upstream/240985; ENST00000638299/Downstream/11957;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/394698, chr5-CpG: 30/Downstream/370171
Nearby gene
HMHB1(No orient, 11957)
Upstream sequence
ttacacactggtttatttgtagcacttattactgaagaagtgatgtcagtcaaaacgaaataaatTGAACTAtgttgagaatggatctaagccagtttgg
Downstream sequence
tcattcccaattattagcttcttttttttaagaactagtaaccttcaaaaatttagaggtagtttacagtttaggatctcctcccctgcaactttcctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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