Basic Information
VIS ID
TVIS30008914
Fusion event
HIV-DCTN4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
150121957/150742395 (Hg38)
End
150121957/150742395 (Hg38)
Orient
-
Location type
Intronic
Target gene
DCTN4
miRNAs that regulate target gene
hsa-mir-142-3p ; hsa-mir-93-5p ; hsa-mir-484 ; hsa-mir-378a-3p ; hsa-mir-149-5p ; hsa-mir-548c-3p ; hsa-mir-4282 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-3606-5p ; hsa-mir-6073 ; hsa-mir-873-3p ; hsa-mir-4522 ; hsa-mir-1251-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-4690-5p ; hsa-mir-6510-5p ; hsa-mir-6165 ; hsa-mir-3664-5p ; hsa-mir-1264 ; hsa-mir-584-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-299-5p ; hsa-mir-630 ; hsa-mir-4742-3p ; hsa-mir-6774-3p ; hsa-mir-486-5p ; hsa-mir-6082 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-26b-5p ; hsa-mir-30a-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-10397/Upstream/1009505; hsa-mir-103a-1/Downstream/779692;
Nearest TSS
ENST00000502646/Upstream/7920; ENST00000526627/Downstream/764;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/41254, chr5-CpG: 36/Downstream/16414
Upstream sequence
ATAATGTTCAGAACAAAATTTTAAGAAAACATCTAATGATGGTGATAACAATCACCAAtgcacagccactgtgccaggcacttgaaatgtattacatttc
Downstream sequence
cttttattctcataacaaccctctgaggtaaggactcttattagtctcattttatatatgaggaaactgaggctcagagatgttaaataacttgctcaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate