Basic Information
VIS ID
TVIS30008918
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
156408073/156981062 (Hg38)
End
156408073/156981062 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2151522; hsa-mir-103a-1/Downstream/3493340;
Nearest TSS
ENST00000502646/Upstream/17807; ENST00000517708/Downstream/68087;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/130388, chr5-CpG: 36/Downstream/161503
Nearby gene
TIMD4(No orient, 17807)
Upstream sequence
TTTAGAAAATGAACAAGTGGGGGTAGACAACAATTTTGTGTGAATTAATCTCCACCATTGAGTTTTCTATCATTTTCTTTGTCAAGAAGGCTTTGAGAAC
Downstream sequence
AATTCTTCTACTtttttttctttctttctttctttctcttctttctctctctctttctctctcttctttctctctttctttctctctctttctttctttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate