Basic Information
VIS ID
TVIS30008922
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
168947729/169520725 (Hg38)
End
168947729/169520725 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC105377714 ; LOC105377715
Nearest miRNA
hsa-mir-10397/Upstream/257031; hsa-mir-10523/Downstream/507763;
Nearest TSS
ENST00000502646/Upstream/219596; ENST00000503209/Downstream/62909;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/219454, chr5-CpG: 47/Downstream/62864
Nearby gene
SPDL1(No orient, 62909)
Upstream sequence
TAGCCAGTTACAGCTCATGGGCTCCTAGTTTTGGAAAGTTCATTAGCTGATTTTTTTTTTTATTTCTTTCCCATTTTTAAAGAATTATAAAATAGGAGGA
Downstream sequence
GGAgaaatgatggggttcgagtcattattatcttttaaaatataaattattccattgtacatttacaaaattttatttttcataatgtctgtgttagtaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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