Basic Information
VIS ID
TVIS30008928
Fusion event
HIV-UBTD2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
171657582/172230578 (Hg38)
End
171657582/172230578 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
UBTD2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-18a-5p
Nearest miRNA
hsa-mir-10397/Upstream/843818; hsa-mir-10523/Downstream/431587;
Nearest TSS
ENST00000502646/Upstream/36406; ENST00000520919/Downstream/53493;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/41643, chr5-CpG: 21/Downstream/24913
Upstream sequence
ctgatcagcaacttacatgtattattattacatttaatcaacataaccatcccaagaggtaagacagttattatccatattttacatatgagagaattga
Downstream sequence
agcttacagaagatgtgatttgcccaaagtcacatagctgcaagtaatacggtagggacagaaGTAAGACCAGAACTGATATCGAAGGCTGAACTAAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate