VISDB Viral Integration Site DataBase

VIS ID

TVIS30008929

Fusion event

HIV-CPEB4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.2

Reference genome

Start

End

173330318/173903315 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-29a-3p ; hsa-mir-145-5p ; hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-32-5p ; hsa-mir-9-5p ; hsa-mir-550a-5p ; hsa-let-7b-5p ; hsa-mir-214-3p ; hsa-mir-342-3p ; hsa-mir-412-3p ; hsa-mir-487b-3p ; hsa-mir-377-3p ; hsa-mir-487a-3p ; hsa-mir-409-3p ; hsa-mir-377-5p ; hsa-mir-374a-5p ; hsa-mir-382-3p ; hsa-mir-155-5p ; hsa-mir-4291 ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-922 ; hsa-mir-3617-3p ; hsa-mir-34a-3p ; hsa-mir-510-3p ; hsa-mir-607 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-203a-3p ; hsa-mir-5589-3p ; hsa-mir-4670-3p ; hsa-mir-4635 ; hsa-mir-561-3p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-491-3p ; hsa-mir-4633-5p ; hsa-mir-6799-3p ; hsa-mir-146b-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-4795-5p ; hsa-mir-3607-3p ; hsa-mir-1267 ; hsa-mir-4289 ; hsa-mir-874-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-29c-5p

Nearest miRNA

hsa-mir-10397/Upstream/555779; hsa-mir-1229/Downstream/848419;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/14339, chr5-CpG: 50/Downstream/85606

Upstream sequence

ttggtgaaattgaactttattttaatctttccaaaggtatggaccttagaacttgaaagacagagctgtttcaggttttgagagcaaagcccttctcttc

Downstream sequence

ataaggaaatcatacagtagttcctgtagaatatttaagctggactgcatcatagctggccaactaggataaaagctataaagcacacccctaaggatct