VISDB Viral Integration Site DataBase

VIS ID

TVIS30008933

Fusion event

HIV-RNF44 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.2

Reference genome

Start

End

175955284/176528283 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-9-5p ; hsa-mir-221-3p ; hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-mir-93-5p ; hsa-mir-296-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-3148 ; hsa-mir-4708-3p ; hsa-mir-202-3p ; hsa-mir-6830-5p ; hsa-mir-3607-3p ; hsa-mir-4802-3p ; hsa-mir-942-3p ; hsa-mir-3662 ; hsa-mir-1252-3p ; hsa-let-7a-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-let-7e-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-338-5p ; hsa-mir-580-5p ; hsa-mir-5692a ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-3918 ; hsa-mir-7160-3p ; hsa-mir-5580-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-3671 ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-616-5p

Nearest miRNA

hsa-mir-10397/Upstream/160252; hsa-mir-1229/Downstream/101156;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/79856, chr5-CpG: 135/Downstream/8214

Upstream sequence

TTAAATATCCACATCCCCAAATCCTACACGTGATTTTGGGCCAAATGAATGAACAAAAACTGCTGCTCCTCACGTTCATGCAAAACAACAGAGGGAGAGG

Downstream sequence

AGATTGGGCACGGGTCTGGCTGCATCCCTGGGAGGGACAACCACCGGGAACACAGGGCTCCCTCTCCCCGTATGGCCCAAGCCCCTCAGGATACGTGTGC