Basic Information
VIS ID
TVIS30008934
Fusion event
HIV-NSD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
End
176563957/177136956 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/507456; hsa-mir-1229/Downstream/2661322;
Nearest cancer related gene
NSD1(OG, No orient, 0)
Upstream sequence
TTtatttattgtttagagactggccttgtcatgttgcccaggctggcgtcgggactcctgggctcattcgatcctcctgcatcagcTAGAACTACAGTAG
Downstream sequence
TTTCAGATTTTGAAGTGTGTATGTGTATGTGTGATATGTATATATTCCGTGTGTATAGAAATGGAGAGTATCTTATTTGAGTTGTTGTTTTCAGTAATGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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