Basic Information
VIS ID
TVIS30008941
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
176849178/177422177 (Hg38)
End
176849178/177422177 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/792677; hsa-mir-1229/Downstream/2376101;
Nearest TSS
ENST00000502646/Upstream/12601; ENST00000512684/Downstream/4319;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/17539, chr5-CpG: 108/Downstream/3844
Nearby gene
GRK6(No orient, 4509)
Upstream sequence
tattgtatgatttaccaaatttcccatttcctttcaccacctgccattgtagaagcacaaactgcaatgaagcccctactacgctggggccctgagtgac
Downstream sequence
tactatgtgtagtgccaccccaccacccaacaagctgtgttagacatgtggtgtatgcaggaaatgaacttttgttgctttaggtcacttaaacttggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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