Basic Information
VIS ID
TVIS30008945
Fusion event
HIV-LOC105377763 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
179094259/179667258 (Hg38)
End
179094259/179667258 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC105377763
Nearest miRNA
hsa-mir-10397/Upstream/3037758; hsa-mir-1229/Downstream/131020;
Nearest TSS
ENST00000502646/Upstream/8993; ENST00000509563/Downstream/11370;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/8921, chr5-CpG: 121/Downstream/10910
Nearby gene
CBY3(No orient, 11300)
Upstream sequence
gggtgcagtggtgtaatctcgtcttactacaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccgagttgctggggctacaggtgtgc
Downstream sequence
gccacctcgcccagctagtttttgtatttttagtagagatggggcttcaccaagttgcccaggctagtcttgaactcctgacctcaagtgatccacccgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate