VISDB Viral Integration Site DataBase

VIS ID

TVIS30008946

Fusion event

HIV-CANX integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

179118729/179691728 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-935 ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-342-3p ; hsa-mir-30e-5p ; hsa-mir-320a ; hsa-mir-185-5p ; hsa-mir-222-3p ; hsa-mir-196a-5p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-187-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-605-3p ; hsa-mir-548c-3p ; hsa-mir-646 ; hsa-mir-1283 ; hsa-mir-1277-5p ; hsa-mir-3613-3p ; hsa-mir-4493 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-5690 ; hsa-mir-6126 ; hsa-mir-6838-5p ; hsa-mir-3190-3p ; hsa-mir-3185 ; hsa-mir-136-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-505-3p ; hsa-mir-3681-3p ; hsa-mir-8485 ; hsa-mir-570-3p ; hsa-mir-323a-3p ; hsa-mir-6132 ; hsa-mir-6836-5p ; hsa-mir-539-3p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-431-5p ; hsa-mir-8075 ; hsa-mir-219b-5p ; hsa-mir-8069 ; hsa-mir-4670-3p ; hsa-mir-4635 ; hsa-mir-6893-3p ; hsa-mir-93-3p ; hsa-mir-370-3p ; hsa-mir-596 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-6878-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-1253 ; hsa-mir-6760-5p ; hsa-mir-4779 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-7161-3p ; hsa-mir-3156-5p ; hsa-mir-106a-3p ; hsa-mir-1252-5p ; hsa-mir-1299 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3612 ; hsa-mir-4695-5p ; hsa-mir-4782-5p ; hsa-mir-5093 ; hsa-mir-516b-5p ; hsa-mir-5706 ; hsa-mir-6128 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6804-5p ; hsa-mir-6891-5p ; hsa-mir-875-3p ; hsa-mir-95-3p

Nearest miRNA

hsa-mir-10397/Upstream/3062228; hsa-mir-1229/Downstream/106550;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/12317, chr5-CpG: 120/Downstream/6612

Nearby gene

CANX(No orient, 7201)

Upstream sequence

AGGAAGAGCCACTACACTGCAATCCCAGCTCGGGATAGCATGAGGCGAGGCAGTACTCTCTTCCTCTCCTTGGGCTCTTTGACATCCCTATATACTTTCC

Downstream sequence

TTGAGGTAGTTTCACTATATCTCTCTTCtttattatttattttatttaattaatttatttattttttgagacggagtctcgctctgtcgcccaggctgga