VISDB Viral Integration Site DataBase

VIS ID

TVIS30008952

Fusion event

HIV-CNOT6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

179974201/180547201 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-373-3p ; hsa-mir-193b-3p ; hsa-mir-130b-3p ; hsa-mir-9-5p ; hsa-mir-96-5p ; hsa-mir-19b-3p ; hsa-mir-15a-3p ; hsa-mir-769-5p ; hsa-mir-106b-5p ; hsa-mir-183-5p ; hsa-mir-4314 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-630 ; hsa-mir-6776-5p ; hsa-mir-6861-5p ; hsa-mir-4717-3p ; hsa-mir-4778-5p ; hsa-mir-1244 ; hsa-mir-186-5p ; hsa-mir-155-5p ; hsa-mir-621 ; hsa-mir-4725-5p ; hsa-mir-3146 ; hsa-mir-410-3p ; hsa-mir-3667-5p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-4683 ; hsa-mir-8485 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6715b-3p ; hsa-mir-371a-5p ; hsa-mir-4729 ; hsa-mir-6715a-3p ; hsa-mir-19a-3p ; hsa-mir-29c-3p ; hsa-mir-1279

Nearest miRNA

hsa-mir-10397/Upstream/531804; hsa-mir-4638/Downstream/496202;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/52022, chr5-CpG: 167/Downstream/42898

Upstream sequence

aggttttggagcattttggattAGGGTTGCTCAAGCTTTGTCAGAAGttaatttgccttcatttttggaagctatttttggtaatttgctaggttgacag

Downstream sequence

gattttttttttccttacagtaaagtttttactcctggccaggcgctgtgcctcacgcctgtattcccagcactttgggaggccacagtgggcaaatcac