Basic Information
VIS ID
TVIS30008953
Fusion event
HIV-LOC105377766 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180252099/180825099 (Hg38)
End
180252099/180825099 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC105377766
Nearest miRNA
hsa-mir-10397/Upstream/809702; hsa-mir-4638/Downstream/218304;
Nearest TSS
ENST00000502646/Upstream/9447; ENST00000508309/Downstream/5858;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/13890, chr5-CpG: 50/Downstream/6104
Nearby gene
HEIH(No orient, 4855)
Upstream sequence
ACTGGAGCAGCATCATTCTCTACAGCTGTGCTGGCAACAGACAGACACAAATGAACTATTTAATATGGCAAAATGCACAGCTGTTTGAGGCTTCTATTAT
Downstream sequence
TAGCACCAGTTCTCGACTCACTGGGAAAACTCTTCTTCAACTTGTTAATGCGACAGTTTTATTTGTTTGGACGCAGCTTTCCATTATCATTCTTCCCACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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