Basic Information
VIS ID
TVIS30008954
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
218562/218562 (Hg38)
End
218562/218562 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Downstream/1171752;
Nearest TSS
ENST00000381078/Upstream/13078; ENST00000603290/Downstream/73068;
Nearest CpG islands
None/Target, None/Upstream, chr6-CpG: 120/Downstream/73386
Nearby gene
LOC285766(No orient, 13078)
Upstream sequence
ttacccATGCAGCTAAGTGAGGGTGACGTGACTCGCTCCACTGAGCCTTGGAGATGACGCCGTCTCTGTTCATTGCCTGCCGTGAAGCTTCTCGTCTTGG
Downstream sequence
AAGGTCATGACTGAGAGGTTTCAGGGGAAATGTTTGAAGGGCAGGATTAGCCTAATCTTGAATCCCTTAGGAACTCCACCATATTACATTACCTCTTTGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate