Basic Information
VIS ID
TVIS30008960
Fusion event
HIV-EXOC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
555697/555697 (Hg38)
End
555697/555697 (Hg38)
Orient
+
Location type
Intronic
Target gene
EXOC2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-30d-5p ; hsa-mir-30a-5p ; hsa-mir-570-3p ; hsa-mir-5582-3p ; hsa-mir-548as-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-659-3p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-563 ; hsa-mir-380-5p ; hsa-mir-203a-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-1252-3p
Nearest miRNA
hsa-mir-10398/Downstream/834617;
Nearest TSS
ENST00000381078/Upstream/31526; ENST00000607644/Downstream/101266;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/18175, chr6-CpG: 76/Downstream/100712
Upstream sequence
TTATGTGCCTGCAAAGCACTGGTCCCAATAACAATACTTTATACCCTAGATATAATGTGAACAACTAAATATCATTTAATTTACGTTGTGCTCGAACAGA
Downstream sequence
ATACATAGAAAGTACCAAGAGAACACAAAAAAGGGGAGCATAACATAAATGAAACATTTGGGTATTGCTAAAACAAGTTGGAATTAATCTTACATTAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate