Basic Information
VIS ID
TVIS30008963
Fusion event
HIV-WRNIP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
2770452/2770218 (Hg38)
End
2770452/2770218 (Hg38)
Orient
+
Location type
Exonic
Target gene
WRNIP1
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-6720/Upstream/1379807; hsa-mir-10398/Downstream/83813;
Nearest TSS
ENST00000381078/Upstream/1445; ENST00000437718/Downstream/67781;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/3677, chr6-CpG: 55/Downstream/71321
Upstream sequence
GGACACTTTCCTTCCTCACGTGGAATGTGGGACGATCACTCTGATTGGGGCAACCACTGAAAACCCTTCCTTCCAGGTCAACGCTGCTCTTCTGAGCCGC
Downstream sequence
TGTCGAGTGATTGTTCTTGAGAAGCTTCCAGTAGAGGCAATGGTGACTATTTTAATGCGAGCGATCAACTCCCTGGGAATCCACGTCCTAGACTCTAGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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