Basic Information
VIS ID
TVIS30008964
Fusion event
HIV-LOC100507336 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
3656328/3656094 (Hg38)
End
3656328/3656094 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100507336
Nearest miRNA
hsa-mir-4645/Upstream/801987; hsa-mir-10398/Downstream/1492139;
Nearest TSS
ENST00000381078/Upstream/31347; ENST00000603791/Downstream/82800;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/198365, chr6-CpG: 233/Downstream/94460
Nearby gene
PXDC1(No orient, 66508)
Upstream sequence
cacacacacacacacacTCTGCACATATGATACAAATTCTCATTTATACAACATTATTCCTCATAGTCCCCCTGTAGACTGCACAATTGTTGATGGTTCT
Downstream sequence
TACTGCCAACTTGGGTTTCCCATAATTATTTTAACGCATTACTCTGTGCCTTCAGTTCTTCATCCATTTCCTCTGGCATAGCTCACACTAGCCCAGCAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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