Basic Information
VIS ID
TVIS30008967
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
11814195/11813962 (Hg38)
End
11814195/11813962 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/1374168; hsa-mir-10398/Downstream/4327594;
Nearest TSS
ENST00000381078/Upstream/3360; ENST00000607445/Downstream/178050;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/275266, chr6-CpG: 37/Downstream/195138
Nearby gene
ADTRP(No orient, 34915)
Upstream sequence
acacaaatcacttgggatctgattaaaatgcagattcagtaggtctgaggagcgcccaaggatcacaggtaatgctgacgatccattgagcacactttga
Downstream sequence
atagcaaggATATTGTAAATGTACTCCAATTGTAAATgagccaaaagacatgggttcaatccaagtaacttgactttgtacaagttacttaatctcacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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