Basic Information
VIS ID
TVIS30008970
Fusion event
HIV-RANBP9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p23
Reference genome
End
13654750/13654518 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3691/Upstream/3214724; hsa-mir-10398/Downstream/2487038;
Nearest cancer related gene
RANBP9(TSG, No orient, 0)
Upstream sequence
AATAAAACCTTTCTATTTTTCCTTATATAGTAAACAAATATACATTCTGAAAATCTTCCATGAGACAGAAACTAAAGATGTATCAAGTTTTGGGCACAGA
Downstream sequence
TTATCCACTTAGGAAGTATAAGGGAATAGTAACTAAATATTTAACAGTATTTTATCTTGGAAGATGCCAGAACCTAGACcagaggtaggcaaagctttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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