Basic Information
VIS ID
TVIS30008976
Fusion event
HIV-LOC105374945 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p23
Reference genome
GRCh37/hg19
Start
14910761/14910530 (Hg38)
End
14910761/14910530 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6A
Target gene
LOC105374945
Nearest miRNA
hsa-mir-3691/Upstream/4470736; hsa-mir-10398/Downstream/1231026;
Nearest TSS
ENST00000381078/Upstream/310840; ENST00000474854/Downstream/111434;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/699017, chr6-CpG: 113/Downstream/334116
Nearby gene
JARID2(No orient, 335445)
Upstream sequence
CATGGGAACTAGCTAGAGATTTCTCACCTGCTCCTTCATGTAACCTTTTGGCTTTTTGTTCCTGTCCTCTATTTATGAAAGAAGTAAAATGATAAGAAAG
Downstream sequence
CATGCACAGTTTGTGATAGTGGATTAGCAGGTCACAAGCAGGTCTGTCTACCCTCCTTCCAGGACATCCGAGTTTCACCTTTGAAATTACAATGGTGGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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