Basic Information
VIS ID
TVIS30008979
Fusion event
HIV-LOC102724520 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
15752675/15752444 (Hg38)
End
15752675/15752444 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724520
Nearest miRNA
hsa-mir-3691/Upstream/5312650; hsa-mir-10398/Downstream/389112;
Nearest TSS
ENST00000381078/Upstream/89386; ENST00000451285/Downstream/242500;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/89263, chr6-CpG: 107/Downstream/376317
Nearby gene
DTNBP1(No orient, 89386)
Upstream sequence
TTGTTGTTGTTGTTAGCATTTGGAttttcttaaactttgaaagattgaagtatgaccatagagataagtgtgcaaatcataaatgtacagctcaatgaat
Downstream sequence
tatcagaaagtgaactcatttgtaaaattaccacctagatcaagaaataaaatattaccagttccctagaaacccacgttgtgacccctccaatttctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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