Basic Information
VIS ID
TVIS30008985
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
18890116/18889885 (Hg38)
End
18890116/18889885 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/318005; hsa-mir-10398/Downstream/8257741;
Nearest TSS
ENST00000381078/Upstream/367138; ENST00000378700/Downstream/431136;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/502270, chr6-CpG: 36/Downstream/801794
Nearby gene
LOC101928519(No orient, 178658)
Upstream sequence
gcaggcacatatttactcttcacacttacacctataatctgcctgggatttatttatgtgtggagtgagagtggctaatttttttttcctagttgatatt
Downstream sequence
catttaatgtagctcaatttcctggaacaacaattcattatccactgctggattctttttttttcttcatccattttcctagccctgtaccaacatcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate