Basic Information
VIS ID
TVIS30008986
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
20039945/20039714 (Hg38)
End
20039945/20039714 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/1467834; hsa-mir-10398/Downstream/7107912;
Nearest TSS
ENST00000381078/Upstream/200634; ENST00000449143/Downstream/172373;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/200631, chr6-CpG: 83/Downstream/172323
Nearby gene
MBOAT1(No orient, 59971)
Upstream sequence
AGTACGTGTATGTAAGTGATAAGGACAGCCATGTGTTCTATAAAAACAGAATGAggccgggagcagtggctcacgcctgtaatcccagcactttgggagg
Downstream sequence
ccgaggtgggcggatcatgaggtcaggagatcgagaccatcctggctaacactgtgaaacccaatctctactaaaaatacaaaaaattagccgggcgtgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate