Basic Information
VIS ID
TVIS30008989
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
22266364/22266135 (Hg38)
End
22266364/22266135 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/3694255; hsa-mir-10398/Downstream/4881491;
Nearest TSS
ENST00000381078/Upstream/45354; ENST00000510882/Downstream/31366;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/599504, chr6-CpG: 100/Downstream/303220
Nearby gene
PRL(No orient, 21109)
Upstream sequence
cgtggatcacctgaggtcagggttttgagaccagcctggccaacatggggaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcagg
Downstream sequence
cacctgtaatccagctactggggaggctgaggcaggagaatcacttgaacccgggaggtagaggttgcagtgagccaagatcacgccactgcactccagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate