Basic Information
VIS ID
TVIS30008990
Fusion event
HIV-CARMIL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
25492751/25492523 (Hg38)
End
25492751/25492523 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6C
Target gene
CARMIL1
miRNAs that regulate target gene
hsa-mir-149-5p
Nearest miRNA
hsa-mir-3691/Upstream/6920643; hsa-mir-10398/Downstream/1655103;
Nearest TSS
ENST00000381078/Upstream/26987; ENST00000635618/Downstream/2598;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/212861, chr6-CpG: 21/Downstream/159707
Upstream sequence
GTAATCGAGGGCCAGTCTGACTACTTCACTTATACACTCCTGACTTTAATTGTTTGCAGAATAAGGCAGTAGATTAGAAGCATCAAGGATTCACAGACAG
Downstream sequence
TAGCAACTTAGAATGCAAAGAGACTGCAGAGGAATTATCAGAGGAATTATGAAAAGTACATGGGTTAGATAGGTATGGAATCTGGGAATATCTAAAGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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