Basic Information
VIS ID
TVIS30008994
Fusion event
HIV-LOC105374989 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26605685/26605457 (Hg38)
End
26605685/26605457 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6C
Target gene
LOC105374989
Nearest miRNA
hsa-mir-3691/Upstream/8033577; hsa-mir-10398/Downstream/542169;
Nearest TSS
ENST00000381078/Upstream/1993; ENST00000562904/Downstream/46039;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/6927, chr6-CpG: 54/Downstream/8328
Nearby gene
ABT1(No orient, 5408)
Upstream sequence
TGAAAAAAATATAGAAGAAGCACTTTCAGATCATATTAAATATATACAAACTGGAAAGAATCTATGCACACAGAAAACACCCAATTTGAAGTGACTTTTA
Downstream sequence
AAGTCTTCAGCAGAGTTAGCGGCATGACAACAGAAAGAAATGAAAGTCTGGACAATGTTTGCTCCACTTAATATGGAGAAAAAAAATGTCCCAAAATAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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